species:   Artha
pid:       MI0005398
parent:    ath-MIR842
paralog:   
locus:     1:22577067-22577265
matures:   ['UCAUGGUCAGAUCCGUCAUCC', 'AUGAUGAAUCCGACCAUGAUG']
srr:       SRR9216050
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram 1:22577067-22577265

0 out of bounds
11 alignments
10 proper strand
7 stranded perfect matches

                                                   ***********************                                                   ***********************                                                   
CAGUACCGUUCAGGGUGACAGAAACAUUUUCGAAAAGAGAGGCUAUAAGCGGGAUGAUGAAUCCGACCAUGAUGGUGUUGCAGAAAUUUAUGUAUGAUGUAGUUAUUGUCCAGGGAUCGAAACACCAUCAUGGUCAGAUCCGUCAUCCCACUUAUGUUUUCUUAGGUCAACAAAUAUGGACAAUUGAAAAGUGAAGCUC
...((((......))))......((.(((((((...((((((.((((((.(((((((((.(((.(((((((((((((((...((..(((.((.((((((....)))))).)).)))))..))))))))))))))).))).))))))))).)))))).))))))..(((..........)))..))))))))).......
-------------------------------------------------------------------------------------------------------------------------------UCAUGGUCAGAUCCGUCAUCC--------------------------------------------------- l=21 a=3 c
-----------------------------------------------------AUGAUGAAUCCGACCAUGAUG----------------------------------------------------------------------------------------------------------------------------- l=21 a=1 c*
-------------------------------------------------------------------------------------------------------------------------------UCAUGGUCAGAUCCGUCAUCC--------------------------------------------------- l=21 a=3 ma
-----------------------------------------------------AUGAUGAAUCCGACCAUGAUG----------------------------------------------------------------------------------------------------------------------------- l=21 a=1 ma*

-----------------------------------------------------AUGAUGAAUCCGACCAUGAUG----------------------------------------------------------------------------------------------------------------------------- l=21 a=1 (c*,ma*)
-------------------------------------------------------------------------------------------------------------------------------UCAUGGUCAGAUCCGUCAUCC--------------------------------------------------- l=21 a=3 (c,ma)
-------------------------------------------------------------------------------------------------------------------------------UCAUGGUCAGAUCCGUCAUCa--------------------------------------------------- l=21 a=1 
-------------------------------------------------------------------------------------------------------------------------------UCAUGGUCAGAUCCGUCAUCu--------------------------------------------------- l=21 a=1 
--------------------------------------------------------------------------------------------------------------------------------CAUGGUCAGAUCCGUCAUCCC-------------------------------------------------- l=21 a=3 
--------------------------------------------------------------------------------------------------------------------------------CAUGGUCAGAUCCGUCAUCCu-------------------------------------------------- l=21 a=1 

mb-01111
ax-1111011
ku-01
ss-111111111111
fn-111
